ViMO

ViMO

Visualizer for Meta-Omics (ViMO) is an interactive R-Shiny-based application to facilitate the data integration between metagenomics, metatranscriptomics and metaproteomics. At the same time ViMO aims to provide the user with interactive, publication-ready, and relevant graphical representations of the data.

ViMO can be accessed online here:
https://magnusarntzen.shinyapps.io/VisualizerForMetaOmics/

ViMO integrate data from

• Metagenomics
• Metatranscriptomics
• Metaproteomics
• Taxonomy
• Quality measures
• KEGG functions and module completion
• Carbohydrate-active enzymes (CAZymes)

ViMO makes plots of:

• MAG quality
• MAG abundance in various files
• CAZyme categories in various MAGs and their abundancies at transcript- and protein-level
• KEGG categories in various MAGs and their abundancies at transcript- and protein-level
• KEGG module completion fractions to see the metabolic potential for each MAG

Some example output:

Bug Reports

Please report bugs through the GitHub issues system.

Copyright (C) 2023, Magnus Arntzen, Norwegian University of Life Science